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  5. Cre04.g214501

Cre04.g214501 (30791490)


Aliases : 30791490

Description : RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase


Gene families : OG_01_0000856 (OrthoFinder) Phylogenetic Tree(s): OG0000856_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre04.g214501
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020603.85 tig00020603_g11822.t1 RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder
Cpa|evm.model.tig00020603.86 tig00020603_g11823.t1 RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder
Cz12g15200.t1 No alias Exoribonuclease, phosphorolytic domain 2; S1 domain;... 0.03 OrthoFinder
Dusal.0870s00002.1 33188353 S1 domain; Exoribonuclease, phosphorolytic domain 2;... 0.04 OrthoFinder
Dusal.1098s00001.1 33201899 Exoribonuclease, phosphorolytic domain 2;... 0.02 OrthoFinder
OT_02G02900.1 No alias S1 domain; Exoribonuclease, phosphorolytic domain 1;... 0.02 OrthoFinder
Sro4_g002940.1 Contig3815.g29212 Polyribonucleotide nucleotidyltransferase 0.03 OrthoFinder
TP04G01990.1 No alias Exoribonuclease, phosphorolytic domain 1; S1 domain;... 0.02 OrthoFinder
XM_003055866.1 MicpuC2_31304, 31304 K Homology domain, type 1; Exoribonuclease,... 0.02 OrthoFinder
XM_003062695.1 MicpuC2_52438, 52438 Exoribonuclease, phosphorolytic domain 1; K Homology... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0004592 pantoate-beta-alanine ligase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 229 292
IPR015847 ExoRNase_PH_dom2 520 589
IPR004088 KH_dom_type_1 618 672
IPR001247 ExoRNase_PH_dom1 95 225
IPR001247 ExoRNase_PH_dom1 425 516
No external refs found!