1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre03.g208100

Cre03.g208100 (30787711, RNB1)


Aliases : 30787711, RNB1

Description : Inactive exonuclease DIS3L2 OS=Arabidopsis thaliana


Gene families : OG_01_0000391 (OrthoFinder) Phylogenetic Tree(s): OG0000391_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g208100
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Dusal.0201s00014.1 33186093 Ribonuclease II/R [Interproscan]. 0.01 OrthoFinder
EOD14152 No alias Exosome complex exonuclease [Ensembl]. 0.02 OrthoFinder
PTI_06G01700.1 No alias Ribonuclease II/R; Dis3-like cold-shock domain 2 [Interproscan]. 0.01 OrthoFinder
Sro443_g144170.1 Contig715.g8263 DIS3-like exonuclease 1 0.01 OrthoFinder
Sro545_g163880.1 Contig1180.g11231 DIS3-like exonuclease 2 0.02 OrthoFinder
Transcript_contig_55221 55221 Rrp44-like cold shock domain; Dis3-like cold-shock... 0.01 OrthoFinder
Vocar.0057s0005.1 32894700 Exosome complex exonuclease RRP44, S1 domain;... 0.02 OrthoFinder
XM_002501940.1 MICPUN_58288, 58288 Ribonuclease II/R; Dis3-like cold-shock domain 2 [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006694 steroid biosynthetic process IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0008987 quinolinate synthetase A activity IEP Enrichment
BP GO:0009435 NAD biosynthetic process IEP Enrichment
MF GO:0016229 steroid dehydrogenase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Enrichment
BP GO:0019362 pyridine nucleotide metabolic process IEP Enrichment
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Enrichment
BP GO:0072524 pyridine-containing compound metabolic process IEP Enrichment
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR041505 Dis3_CSD2 366 448
IPR033771 Rrp44_CSD1 167 240
IPR001900 RNase_II/R 478 753
IPR001900 RNase_II/R 800 863
No external refs found!