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  5. Cre03.g199350

Cre03.g199350 (30787807)


Aliases : 30787807

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.SMARCAL1-like group.SMARCAL1 chromatin remodeling factor


Gene families : OG_01_0000314 (OrthoFinder) Phylogenetic Tree(s): OG0000314_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g199350
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021168.60 tig00021168_g19126.t1 Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1... 0.01 OrthoFinder
Cz02g36150.t1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.09 OrthoFinder
EOD11461 No alias SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
EOD34995 No alias SNF2-related, N-terminal domain [Interproscan]. 0.05 OrthoFinder
EOD41448 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.04 OrthoFinder
OT_10G02970.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
PTI_05G03660.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
Sro352_g124160.1 Contig2645.g21392 Regulator of chromatin subfamily A-like protein 1 0.01 OrthoFinder
Sro59_g034290.1 Contig571.g7275 Annealing helicase and endonuclease ZRANB3 0.01 OrthoFinder
SymbC1.scaffold3197.7 3197.7 SNF2-related, N-terminal domain; Helicase, C-terminal... 0.03 OrthoFinder
Vocar.0020s0120.1 32886803 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.05 OrthoFinder
XM_002505505.1 MICPUN_87840, 87840 SNF2 super family 0.04 OrthoFinder
XM_003063613.1 MicpuC2_1244, 1244 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Enrichment
CC GO:0000796 condensin complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007059 chromosome segregation IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 699 807
IPR000330 SNF2_N 407 633
No external refs found!