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  5. Cre03.g182950

Cre03.g182950 (30787736)


Aliases : 30787736

Description : RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp43 RNA helicase


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g182950
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
Cre12.g520150 30792869 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder
Cz02g22140.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Cz12g28100.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Cz14g08150.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
PTI_08G03610.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
lcl|BLLF01001160.1_cds_GFH17514.1_11991 HaLaN_14169, GFH17514 Helicase-associated domain [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59127.1_7530 PRW59127 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
BP GO:0006817 phosphate ion transport IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 448 536
IPR001650 Helicase_C 254 385
IPR011709 DUF1605 598 674
IPR003593 AAA+_ATPase 63 205
No external refs found!