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  5. Cre03.g174500

Cre03.g174500 (30788186)


Aliases : 30788186

Description : Homeobox-DDT domain protein RLT1 OS=Arabidopsis thaliana


Gene families : OG_01_0004402 (OrthoFinder) Phylogenetic Tree(s): OG0004402_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g174500
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Cz01g30110.t1 No alias HB1/Asxl, restriction endonuclease HTH domain; WHIM2... 0.07 OrthoFinder
Dusal.0301s00003.1 33195496 WHIM2 domain; HB1/Asxl, restriction endonuclease HTH... 0.03 OrthoFinder
Transcript_contig_55912 55912 Homeobox domain; HB1/Asxl, restriction endonuclease HTH... 0.02 OrthoFinder
Vocar.0068s0005.1 32895506 DDT domain; HB1/Asxl, restriction endonuclease HTH... 0.03 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60206.1_4699 PRW60206 Homeobox unc-4 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003714 transcription corepressor activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0003989 acetyl-CoA carboxylase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0016421 CoA carboxylase activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 16 70
IPR028941 WHIM2_dom 1261 1333
IPR028942 WHIM1_dom 1075 1114
IPR018501 DDT_dom 658 707
IPR007759 Asxl_HARE-HTH 826 893
No external refs found!