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  5. Cre03.g160500

Cre03.g160500 (30788286)


Aliases : 30788286

Description : Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase


Gene families : OG_01_0001772 (OrthoFinder) Phylogenetic Tree(s): OG0001772_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g160500
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020510.54 tig00020510_g9835.t1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder
Cpa|evm.model.tig00020510.55 tig00020510_g9836.t1 Lysine--tRNA ligase OS=Oryza sativa subsp. japonica 0.02 OrthoFinder
Cz01g23090.t1 No alias Aminoacyl-tRNA synthetase, class II (D/K/N) [Interproscan]. 0.09 OrthoFinder
Cz01g23100.t1 No alias OB-fold nucleic acid binding domain, AA-tRNA... 0.09 OrthoFinder
Dusal.0028s00014.1 33198458 Aminoacyl-tRNA synthetase, class II (D/K/N) [Interproscan]. 0.04 OrthoFinder
Dusal.0028s00015.1 33198487 Aminoacyl-tRNA synthetase, class II (D/K/N); OB-fold... 0.01 OrthoFinder
EOD34193 No alias Putative Lysyl-tRNA synthetase [Ensembl]. 0.06 OrthoFinder
OT_14G02090.1 No alias Aminoacyl-tRNA synthetase, class II (D/K/N); OB-fold... 0.06 OrthoFinder
PTI_22G00380.1 No alias OB-fold nucleic acid binding domain, AA-tRNA... 0.1 OrthoFinder
Sro1601_g285200.1 Contig4269.g32304 Lysine--tRNA ligase 0.09 OrthoFinder
Transcript_contig_54752 54752 OB-fold nucleic acid binding domain, AA-tRNA... 0.05 OrthoFinder
Vocar.0005s0287.1 32883756 OB-fold nucleic acid binding domain, AA-tRNA... 0.06 OrthoFinder
XM_002505728.1 MICPUN_103834, 103834 OB-fold nucleic acid binding domain, AA-tRNA... 0.04 OrthoFinder
XM_003063769.1 MicpuC2_53494, 53494 OB-fold nucleic acid binding domain, AA-tRNA... 0.05 OrthoFinder
lcl|BLLF01000394.1_cds_GFH11345.1_5822 HaLaN_06828, GFH11345 Lysyl-tRNA synthetase 0.03 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20465.1_5480 PRW20465 Lysine-tRNA ligase isoform X2 isoform B 0.02 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20466.1_5481 PRW20466 Lysine-tRNA ligase isoform X2 isoform A 0.04 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491345.1_2346 KAA8491345 Lysine--tRNA ligase 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006323 DNA packaging IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
MF GO:0008837 diaminopimelate epimerase activity IEP Enrichment
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0030261 chromosome condensation IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
MF GO:0047661 amino-acid racemase activity IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004365 NA-bd_OB_tRNA 133 211
IPR004364 Aa-tRNA-synt_II 230 579
No external refs found!