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  5. Cre03.g157300

Cre03.g157300 (30787087, CAF1)


Aliases : 30787087, CAF1

Description : Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana


Gene families : OG_01_0002408 (OrthoFinder) Phylogenetic Tree(s): OG0002408_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g157300
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
PTI_01G09600.1 No alias Ribonuclease CAF1 [Interproscan]. 0.02 OrthoFinder
Sro222_g091170.1 Contig3134.g24880 NOT transcription complex subunit 7 0.03 OrthoFinder
Transcript_contig_58805 58805 Ribonuclease CAF1 [Interproscan]. 0.02 OrthoFinder
Vocar.0019s0146.1 32892800 Ribonuclease CAF1 [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000090.1_cds_GFH07366.1_1843 HaLaN_02154, GFH07366 Putative CCR4-associated factor 1 0.04 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493492.1_4254 KAA8493492 CCR4-NOT transcription complex subunit 7 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
MF GO:0008146 sulfotransferase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 8 117
IPR006941 RNase_CAF1 143 224
No external refs found!