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  5. Cre02.g086650

Cre02.g086650 (30785243, SMC2)


Aliases : 30785243, SMC2

Description : Cell cycle.mitosis and meiosis.chromatin condensation.condensin I/II complex.CAP-E2/SMC2 component


Gene families : OG_01_0002043 (OrthoFinder) Phylogenetic Tree(s): OG0002043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g086650
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000615.55 tig00000615_g2585.t1 Cell cycle.mitosis and meiosis.chromatin... 0.07 OrthoFinder
Cz10g09260.t1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.09 OrthoFinder
Dusal.0010s00009.1 33196797 RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.07 OrthoFinder
EOD10000 No alias SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan]. 0.07 OrthoFinder
OT_04G00570.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.05 OrthoFinder
PTI_22G01140.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.07 OrthoFinder
Sro864_g212600.1 Contig2395.g19632 Mitotic chromosome and X-chromosome-associated protein mix-1 0.05 OrthoFinder
TP01G05320.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.07 OrthoFinder
Vocar.0004s0431.1 32890001 SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan]. 0.09 OrthoFinder
XM_002504700.1 MICPUN_97912, 97912 Condensin complex component 0.04 OrthoFinder
XM_003064603.1 MicpuC2_43587, 43587 Condensin complex component 0.03 OrthoFinder
lcl|BLLF01000924.1_cds_GFH15948.1_10425 HaLaN_12279, GFH15948 SMC hinge domain-containing protein 0.04 OrthoFinder
lcl|BLLF01000924.1_cds_GFH15949.1_10426 HaLaN_12280, GFH15949 Structural maintenance of chromosomes protein 0.03 OrthoFinder
lcl|BLLF01001625.1_cds_GFH20392.1_14869 HaLaN_17503, GFH20392 Structural maintenance of chromosomes protein 0.03 OrthoFinder
lcl|BLLF01001625.1_cds_GFH20393.1_14870 HaLaN_17504, GFH20393 Structural maintenance of chromosomes protein 0.04 OrthoFinder
lcl|BLLF01003274.1_cds_GFH26889.1_21366 HaLaN_25113, GFH26889 SMC hinge domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61562.1_554 PRW61562 Structural maintenance of chromosomes 2-1 isoform B 0.08 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61563.1_555 PRW61563 Structural maintenance of chromosomes 2-1 isoform A 0.08 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497009.1_738 KAA8497009 Structural maintenance of chromosomes protein 2-1 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Enrichment
CC GO:0000796 condensin complex IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004146 dihydrofolate reductase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007059 chromosome segregation IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
BP GO:0032954 regulation of cytokinetic process IEP Enrichment
BP GO:0032955 regulation of division septum assembly IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
BP GO:0044087 regulation of cellular component biogenesis IEP Enrichment
BP GO:0046653 tetrahydrofolate metabolic process IEP Enrichment
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901891 regulation of cell septum assembly IEP Enrichment
InterPro domains Description Start Stop
IPR010935 SMC_hinge 517 635
IPR003395 RecF/RecN/SMC_N 2 1156
No external refs found!