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  5. Cre02.g075150

Cre02.g075150 (30785072, RPB2)


Aliases : 30785072, RPB2

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2


Gene families : OG_01_0001898 (OrthoFinder) Phylogenetic Tree(s): OG0001898_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g075150
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000158.16 tig00000158_g10129.t1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.08 OrthoFinder
Cz11g25180.t1 No alias RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2,... 0.03 OrthoFinder
Dusal.0377s00021.1 33195250 RNA polymerase, beta subunit, protrusion; RNA polymerase... 0.03 OrthoFinder
EOD11634 No alias RNA polymerase, beta subunit, protrusion; DNA-directed... 0.05 OrthoFinder
EOD30410 No alias RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2,... 0.05 OrthoFinder
OT_01G01700.1 No alias RNA polymerase Rpb2, domain 7; DNA-directed RNA... 0.04 OrthoFinder
XM_002500494.1 MICPUN_93697, 93697 RNA polymerase, beta subunit, protrusion; RNA polymerase... 0.06 OrthoFinder
lcl|BLLF01000259.1_cds_GFH09745.1_4222 HaLaN_04943, GFH09745 DNA-directed RNA polymerase subunit beta 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61164.1_363 PRW61164 DNA-directed RNA polymerase II subunit RPB2 isoform A 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61165.1_364 PRW61165 DNA-directed RNA polymerase II subunit RPB2 isoform B 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003779 actin binding IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR007647 RNA_pol_Rpb2_5 656 706
IPR007644 RNA_pol_bsu_protrusion 37 444
IPR007642 RNA_pol_Rpb2_2 206 397
IPR007641 RNA_pol_Rpb2_7 1526 1605
IPR007646 RNA_pol_Rpb2_4 569 630
IPR007645 RNA_pol_Rpb2_3 470 534
IPR007120 DNA-dir_RNAP_su2_dom 713 1082
No external refs found!