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  5. Cre01.g023787

Cre01.g023787 (30789637)


Aliases : 30789637

Description : ABC transporter F family member 1 OS=Arabidopsis thaliana


Gene families : OG_01_0000132 (OrthoFinder) Phylogenetic Tree(s): OG0000132_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g023787
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000383.51 tig00000383_g24665.t1 ABC transporter F family member 1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cpa|evm.model.tig00020629.98 tig00020629_g12419.t1 ABC transporter F family member 3 OS=Arabidopsis thaliana 0.06 OrthoFinder
Cz03g13130.t1 No alias ABC-transporter extension domain; ABC transporter-like... 0.03 OrthoFinder
Dusal.0100s00016.1 33202465 ABC transporter-like [Interproscan]. 0.03 OrthoFinder
Dusal.0335s00016.1 33196473 ABC transporter-like; ABC-transporter extension domain... 0.02 OrthoFinder
Dusal.1033s00003.1 33195065 ABC transporter-like; ABC-transporter extension domain... 0.02 OrthoFinder
EOD04357 No alias ABC transporter protein [Ensembl]. 0.04 OrthoFinder
EOD21710 No alias W2 domain; ABC transporter-like; ABC-transporter... 0.03 OrthoFinder
OT_05G02420.1 No alias ABC-transporter extension domain; ABC transporter-like;... 0.06 OrthoFinder
OT_15G01840.1 No alias ABC-transporter extension domain; ABC transporter-like... 0.02 OrthoFinder
OT_15G02610.1 No alias ABC-transporter extension domain; ABC transporter-like... 0.06 OrthoFinder
Sro2585_g331900.1 Contig1533.g13925 Tylosin resistance ATP-binding protein TlrC 0.02 OrthoFinder
Sro365_g127370.1 Contig3612.g27911 Tylosin resistance ATP-binding protein TlrC 0.02 OrthoFinder
SymbC1.scaffold1003.11 1003.11 ABC transporter-like [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54041 54041 ABC transporter-like [Interproscan]. 0.03 OrthoFinder
Transcript_contig_78244 78244 ABC-transporter extension domain; ABC transporter-like... 0.04 OrthoFinder
XM_002502487.1 MICPUN_58625, 58625 ABC-transporter extension domain; ZC3H15/TMA46 family,... 0.06 OrthoFinder
XM_002503388.1 MICPUN_83355, 83355 ATP-binding cassette superfamily 0.02 OrthoFinder
XM_002505228.1 MICPUN_62615, 62615 ABC transporter 0.06 OrthoFinder
XM_003055665.1 MicpuC2_50666, 50666 ABC transporter/cobalt transport family protein 0.03 OrthoFinder
XM_003057335.1 MicpuC2_70921, 70921 Zinc finger/ABC transporter fusion protein 0.03 OrthoFinder
XM_003060298.1 MicpuC2_60050, 60050 ABC transporter 0.03 OrthoFinder
lcl|BLLF01000100.1_cds_GFH07516.1_1993 HaLaN_02328, GFH07516 ABC transporter-like [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 111 268
IPR032781 ABC_tran_Xtn 307 350
No external refs found!