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  5. Cre01.g019200

Cre01.g019200 (30788766)


Aliases : 30788766

No description available


Gene families : OG_01_0003254 (OrthoFinder) Phylogenetic Tree(s): OG0003254_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g019200
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020943.93 tig00020943_g16333.t1 No description available 0.05 OrthoFinder
EOD09537 No alias Nucleolar, Nop52 [Interproscan]. 0.08 OrthoFinder
OT_14G00850.1 No alias Nucleolar, Nop52 [Interproscan]. 0.17 OrthoFinder
PTI_04G01930.1 No alias Nucleolar, Nop52 [Interproscan]. 0.02 OrthoFinder
Sro550_g164740.1 Contig731.g8404 RNA processing protein 1 homolog B 0.12 OrthoFinder
TP02G06580.1 No alias Nucleolar, Nop52 [Interproscan]. 0.09 OrthoFinder
Transcript_contig_89618 89618 Nucleolar, Nop52 [Interproscan]. 0.01 OrthoFinder
UNPLg00194.t1 No alias Nucleolar, Nop52 [Interproscan]. 0.08 OrthoFinder
Vocar.0045s0054.1 32887813 Nucleolar, Nop52 [Interproscan]. 0.05 OrthoFinder
XM_002505441.1 MICPUN_87731, 87731 Nucleolar, Nop52 [Interproscan]. 0.17 OrthoFinder
XM_003059715.1 MicpuC2_18763, 18763 Nucleolar, Nop52 [Interproscan]. 0.11 OrthoFinder
lcl|BLLF01000680.1_cds_GFH14040.1_8517 HaLaN_10013, GFH14040 Nucleolar, Nop52 [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18349.1_5786 PRW18349 Ribosomal RNA processing 1-like protein 0.15 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496889.1_618 KAA8496889 Ribosomal RNA processing protein 1-like A 0.07 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR010301 Nop52 32 234
No external refs found!