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  5. Cpa|evm.model.tig00000310.30

Cpa|evm.model.tig00000310.30 (tig00000310_g23951.t1)


Aliases : tig00000310_g23951.t1

Description : RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Gar1 core component


Gene families : OG_01_0004189 (OrthoFinder) Phylogenetic Tree(s): OG0004189_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000310.30
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre13.g567850 30784649 RNA processing.RNA modification.pseudouridylation.H/ACA... 0.05 OrthoFinder
Dusal.0897s00002.1 33189697 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1... 0.05 OrthoFinder
OT_02G01270.1 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1... 0.02 OrthoFinder
PTI_01G04880.1 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1... 0.04 OrthoFinder
Sro758_g198070.1 Contig434.g5859 Ribonucleoprotein complex subunit 1 0.04 OrthoFinder
TP04G04360.1 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1... 0.03 OrthoFinder
Transcript_contig_58885 58885 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1... 0.07 OrthoFinder
XM_002504197.1 MICPUN_107421, 107421 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1... 0.08 OrthoFinder
XM_003059784.1 MicpuC2_11721, 11721 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497552.1_6505 KAA8497552 H/ACA ribonucleoprotein complex subunit 1 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004664 prephenate dehydratase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007504 H/ACA_rnp_Gar1/Naf1 22 103
No external refs found!