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Aliases : 32891714
Description : Regulator of chromosome condensation (RCC1) repeat [Interproscan].
Gene families : OG_01_0000020 (OrthoFinder) Phylogenetic Tree(s): OG0000020_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Vocar.0078s0015.1 | |
| Cluster | HCCA: Cluster_86 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cz02g12140.t1 | No alias | Regulator of chromosome condensation, RCC1 [Interproscan]. | 0.02 | OrthoFinder | |
| EOD05330 | No alias | Regulator of chromosome condensation, RCC1 [Interproscan]. | 0.02 | OrthoFinder | |
| EOD10910 | No alias | Hypothetical protein [Ensembl]. | 0.01 | OrthoFinder | |
| EOD22353 | No alias | E3 ubiquitin ligase [Ensembl]. | 0.01 | OrthoFinder | |
| EOD23616 | No alias | Regulator of chromosome condensation, RCC1 [Interproscan]. | 0.03 | OrthoFinder | |
| EOD38720 | No alias | Regulator of chromosome condensation, RCC1 [Interproscan]. | 0.01 | OrthoFinder | |
| UNPLg00270.t1 | No alias | Regulator of chromosome condensation, RCC1 [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|BLLF01002473.1_cds_GFH24209.1_18686 | HaLaN_21957, GFH24209 | UV-resistance 8 protein | 0.02 | OrthoFinder | |
| lcl|VRMN01000002.1_cds_KAA8496422.1_151 | KAA8496422 | Secretion-regulating guanine nucleotide exchange factor | 0.02 | OrthoFinder | |
| lcl|VRMN01000002.1_cds_KAA8497085.1_814 | KAA8497085 | Protein RCC2 | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| CC | GO:0000808 | origin recognition complex | IEP | Enrichment |
| BP | GO:0001510 | RNA methylation | IEP | Enrichment |
| BP | GO:0002949 | tRNA threonylcarbamoyladenosine modification | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003678 | DNA helicase activity | IEP | Enrichment |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Enrichment |
| MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | Enrichment |
| MF | GO:0003937 | IMP cyclohydrolase activity | IEP | Enrichment |
| MF | GO:0004386 | helicase activity | IEP | Enrichment |
| MF | GO:0004637 | phosphoribosylamine-glycine ligase activity | IEP | Enrichment |
| MF | GO:0004643 | phosphoribosylaminoimidazolecarboxamide formyltransferase activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006144 | purine nucleobase metabolic process | IEP | Enrichment |
| BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
| BP | GO:0006265 | DNA topological change | IEP | Enrichment |
| BP | GO:0006302 | double-strand break repair | IEP | Enrichment |
| BP | GO:0006303 | double-strand break repair via nonhomologous end joining | IEP | Enrichment |
| BP | GO:0006364 | rRNA processing | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
| BP | GO:0006400 | tRNA modification | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0006996 | organelle organization | IEP | Enrichment |
| BP | GO:0008033 | tRNA processing | IEP | Enrichment |
| MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| MF | GO:0008192 | RNA guanylyltransferase activity | IEP | Enrichment |
| MF | GO:0008193 | tRNA guanylyltransferase activity | IEP | Enrichment |
| BP | GO:0009112 | nucleobase metabolic process | IEP | Enrichment |
| BP | GO:0009113 | purine nucleobase biosynthetic process | IEP | Enrichment |
| BP | GO:0009451 | RNA modification | IEP | Enrichment |
| BP | GO:0009890 | negative regulation of biosynthetic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
| MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Enrichment |
| MF | GO:0016763 | pentosyltransferase activity | IEP | Enrichment |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Enrichment |
| MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Enrichment |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Enrichment |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Enrichment |
| MF | GO:0016853 | isomerase activity | IEP | Enrichment |
| MF | GO:0016887 | ATPase | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| MF | GO:0019238 | cyclohydrolase activity | IEP | Enrichment |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Enrichment |
| MF | GO:0030151 | molybdenum ion binding | IEP | Enrichment |
| BP | GO:0030488 | tRNA methylation | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| CC | GO:0030684 | preribosome | IEP | Enrichment |
| CC | GO:0030688 | preribosome, small subunit precursor | IEP | Enrichment |
| BP | GO:0031324 | negative regulation of cellular metabolic process | IEP | Enrichment |
| BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | Enrichment |
| CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | Enrichment |
| CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Enrichment |
| CC | GO:0032991 | protein-containing complex | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| CC | GO:0034708 | methyltransferase complex | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| BP | GO:0042440 | pigment metabolic process | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043527 | tRNA methyltransferase complex | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0045892 | negative regulation of transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0046112 | nucleobase biosynthetic process | IEP | Enrichment |
| BP | GO:0046148 | pigment biosynthetic process | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0051172 | negative regulation of nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0051253 | negative regulation of RNA metabolic process | IEP | Enrichment |
| BP | GO:0051276 | chromosome organization | IEP | Enrichment |
| BP | GO:0070525 | tRNA threonylcarbamoyladenosine metabolic process | IEP | Enrichment |
| MF | GO:0070568 | guanylyltransferase activity | IEP | Enrichment |
| BP | GO:0071103 | DNA conformation change | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Enrichment |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| BP | GO:1902679 | negative regulation of RNA biosynthetic process | IEP | Enrichment |
| BP | GO:1903507 | negative regulation of nucleic acid-templated transcription | IEP | Enrichment |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
| BP | GO:2000113 | negative regulation of cellular macromolecule biosynthetic process | IEP | Enrichment |
No InterPro domains available for this sequence
| No external refs found! |