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  5. Vocar.0054s0034.1

Vocar.0054s0034.1 (32894621)


Aliases : 32894621

Description : 60s Acidic ribosomal protein [Interproscan].


Gene families : OG_01_0002401 (OrthoFinder) Phylogenetic Tree(s): OG0002401_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0054s0034.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020830.75 tig00020830_g14458.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder
Cre02.g143050 30785883, RPP2 Protein biosynthesis.cytosolic ribosome.large subunit... 0.25 OrthoFinder
Cz11g03220.t1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.16 OrthoFinder
Dusal.0521s00007.1 33197388 60s Acidic ribosomal protein [Interproscan]. 0.05 OrthoFinder
EOD22996 No alias 60s Acidic ribosomal protein [Interproscan]. 0.06 OrthoFinder
OT_15G02430.1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.04 OrthoFinder
PTI_20G01490.1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.15 OrthoFinder
PTI_21G02280.1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.1 OrthoFinder
Sro1582_g283860.1 Contig2540.g20713 Acidic ribosomal protein P2 0.01 OrthoFinder
TP02G00810.1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.04 OrthoFinder
TP08G04160.1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.11 OrthoFinder
XM_002504932.1 MICPUN_106274, 106274 60s Acidic ribosomal protein [Interproscan]. 0.14 OrthoFinder
lcl|LHPG02000015.1_cds_PRW34006.1_2819 PRW34006 60S acidic ribosomal P2 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494472.1_3002 KAA8494472 60S acidic ribosomal protein P2 0.12 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494747.1_3277 KAA8494747 60S acidic ribosomal protein P2 0.08 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
CC GO:0008250 oligosaccharyltransferase complex IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030686 90S preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0034998 oligosaccharyltransferase I complex IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment

No InterPro domains available for this sequence

No external refs found!