Vocar.0045s0014.1 (32887783)

Aliases : 32887783

Description : (Uracil-5)-methyltransferase family [Interproscan].

Gene families : OG_01_0001532 (OrthoFinder) Phylogenetic Tree(s): OG0001532_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0045s0014.1
Cluster	HCCA: Cluster_138

Target	Alias	Description	ECC score	Gene Family Method
Cre01.g021150	30789613, TMU1	No description available	0.04	OrthoFinder
Cz07g11240.t1	No alias	(Uracil-5)-methyltransferase family [Interproscan].	0.02	OrthoFinder
XM_002501229.1	MICPUN_57633, 57633	(Uracil-5)-methyltransferase family [Interproscan].	0.04	OrthoFinder
XM_003062310.1	MicpuC2_29176, 29176	(Uracil-5)-methyltransferase family [Interproscan].	0.01	OrthoFinder
lcl\|BLLF01000626.1_cds_GFH13555.1_8032	HaLaN_09462, GFH13555	TRNA (uracil-5-)-methyltransferase	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005525	GTP binding	IEP	Enrichment
BP	GO:0006270	DNA replication initiation	IEP	Enrichment
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Enrichment
MF	GO:0009982	pseudouridine synthase activity	IEP	Enrichment
BP	GO:0016073	snRNA metabolic process	IEP	Enrichment
BP	GO:0016180	snRNA processing	IEP	Enrichment
MF	GO:0016853	isomerase activity	IEP	Enrichment
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Enrichment
MF	GO:0019001	guanyl nucleotide binding	IEP	Enrichment
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Enrichment
BP	GO:0031123	RNA 3'-end processing	IEP	Enrichment
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Enrichment
BP	GO:0034472	snRNA 3'-end processing	IEP	Enrichment
BP	GO:0034477	U6 snRNA 3'-end processing	IEP	Enrichment
BP	GO:0042254	ribosome biogenesis	IEP	Enrichment
BP	GO:0043628	ncRNA 3'-end processing	IEP	Enrichment
BP	GO:0044085	cellular component biogenesis	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR010280	U5_MeTrfase_fam	196	340
IPR010280	U5_MeTrfase_fam	86	142
IPR010280	U5_MeTrfase_fam	405	563

External Links

No external refs found!