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  5. Vocar.0037s0105.1

Vocar.0037s0105.1 (32897478)


Aliases : 32897478

Description : ATPase, AAA-type, core; BRCT domain; DNA replication factor RFC1, C-terminal [Interproscan].


Gene families : OG_01_0002804 (OrthoFinder) Phylogenetic Tree(s): OG0002804_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0037s0105.1
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold7028.1 7028.1 ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495911.1_1909 KAA8495911 Replication factor C subunit 1 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003689 DNA clamp loader activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005663 DNA replication factor C complex IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 534 647
IPR013725 DNA_replication_fac_RFC1_C 802 969
IPR001357 BRCT_dom 325 400
No external refs found!