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  5. Vocar.0036s0123.1

Vocar.0036s0123.1 (32892301)


Aliases : 32892301

Description : WD40 repeat [Interproscan].


Gene families : OG_01_0004113 (OrthoFinder) Phylogenetic Tree(s): OG0004113_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0036s0123.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001278.11 tig00001278_g7990.t1 RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder
OT_01G06450.1 No alias WD40 repeat [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
BP GO:0031503 protein-containing complex localization IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0033566 gamma-tubulin complex localization IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0034629 cellular protein-containing complex localization IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 294 342
IPR001680 WD40_repeat 244 275
IPR001680 WD40_repeat 94 123
No external refs found!