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  5. Vocar.0036s0117.1

Vocar.0036s0117.1 (32892199)


Aliases : 32892199

Description : Ribosomal RNA-processing protein 15 [Interproscan].


Gene families : OG_01_0004375 (OrthoFinder) Phylogenetic Tree(s): OG0004375_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0036s0117.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cre02.g095850 30784821 No description available 0.03 OrthoFinder
Cz03g05250.t1 No alias Ribosomal RNA-processing protein 15 [Interproscan]. 0.04 OrthoFinder
Transcript_contig_67851 67851 Ribosomal RNA-processing protein 15 [Interproscan]. 0.01 OrthoFinder
XM_003064272.1 MicpuC2_43396, 43396 Ribosomal RNA-processing protein 15 [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58409.1_7639 PRW58409 RRP15 isoform X2 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
CC GO:0000439 transcription factor TFIIH core complex IEP Enrichment
MF GO:0001671 ATPase activator activity IEP Enrichment
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005534 galactose binding IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
BP GO:0070525 tRNA threonylcarbamoyladenosine metabolic process IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR012459 Rrp15 252 386
No external refs found!