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  5. Vocar.0031s0042.1

Vocar.0031s0042.1 (32890189)


Aliases : 32890189

Description : VPS13, repeated coiled region; Vacuolar protein sorting-associated protein 62; Vacuolar protein sorting-associated protein 13, N-terminal domain; Vacuolar protein sorting-associated protein 13, second N-terminal domain [Interproscan].


Gene families : OG_01_0000454 (OrthoFinder) Phylogenetic Tree(s): OG0000454_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0031s0042.1
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000459.51 tig00000459_g1113.t1 No description available 0.03 OrthoFinder
Cpa|evm.model.tig00021537.38 tig00021537_g22289.t1 No description available 0.02 OrthoFinder
Cre12.g483500 30792128 No description available 0.05 OrthoFinder
Dusal.0511s00002.1 33195055 Vacuolar protein sorting-associated protein 13,... 0.02 OrthoFinder
Dusal.0595s00006.1 33191199 Hypothetical protein 0.04 OrthoFinder
Dusal.0595s00012.1 33191197 Vacuolar protein sorting-associated protein 13,... 0.02 OrthoFinder
EOD25591 No alias Vacuolar protein sorting-associated protein 13,... 0.02 OrthoFinder
EOD38883 No alias Vacuolar protein sorting-associated protein 13,... 0.03 OrthoFinder
Transcript_contig_53733 53733 Vacuolar protein sorting-associated protein 13,... 0.02 OrthoFinder
XM_002506972.1 MICPUN_54783, 54783 Vacuolar protein sorting-associated protein 13, second... 0.02 OrthoFinder
lcl|BLLF01000617.1_cds_GFH13478.1_7955 HaLaN_09371, GFH13478 Hypothetical protein 0.02 OrthoFinder
lcl|BLLF01005781.1_cds_GFH31625.1_26102 HaLaN_30702, GFH31625 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494978.1_3508 KAA8494978 Putative vacuolar protein sorting-associated protein 13A 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR009291 Vps62 3213 3346
IPR031642 VPS13_mid_rpt 848 960
IPR031646 VPS13_N2 183 455
IPR026854 VPS13-like_N 2 100
No external refs found!