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  5. Vocar.0028s0155.1

Vocar.0028s0155.1 (32895592)


Aliases : 32895592

Description : MCM, AAA-lid domain; MCM N-terminal domain; MCM OB domain; MCM domain [Interproscan].


Gene families : OG_01_0000321 (OrthoFinder) Phylogenetic Tree(s): OG0000321_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0028s0155.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.38 tig00000241_g20896.t1 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.02 OrthoFinder
Cpa|evm.model.tig00020918.5 tig00020918_g15883.t1 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.02 OrthoFinder
Cre03.g178650 30786765, MCM6 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.07 OrthoFinder
Cre10.g455850 30790894, MCM7 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.07 OrthoFinder
Cre12.g540927 30791701 Probable DNA helicase MCM9 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cz01g28090.t1 No alias MCM, AAA-lid domain; MCM OB domain; MCM domain; Mcm6,... 0.05 OrthoFinder
Cz10g20280.t1 No alias MCM N-terminal domain; MCM, AAA-lid domain; MCM OB... 0.06 OrthoFinder
EOD16317 No alias MCM OB domain; MCM, AAA-lid domain; MCM N-terminal... 0.04 OrthoFinder
EOD19125 No alias MCM OB domain; MCM, AAA-lid domain; MCM N-terminal... 0.04 OrthoFinder
EOD29724 No alias MCM OB domain; MCM, AAA-lid domain; MCM N-terminal... 0.04 OrthoFinder
OT_01G02550.1 No alias MCM, AAA-lid domain; MCM OB domain; Mcm6, C-terminal... 0.03 OrthoFinder
PTI_06G04900.1 No alias MCM domain; MCM, AAA-lid domain; MCM OB domain [Interproscan]. 0.04 OrthoFinder
Sro1053_g235850.1 Contig4118.g31456 Zygotic DNA replication licensing factor mcm3 0.02 OrthoFinder
TP05G04710.1 No alias MCM, AAA-lid domain; MCM OB domain; MCM domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54907 54907 MCM domain; MCM OB domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_56242 56242 MCM domain; MCM N-terminal domain; MCM OB domain [Interproscan]. 0.04 OrthoFinder
Transcript_contig_67540 67540 MCM, AAA-lid domain; MCM domain; MCM N-terminal domain;... 0.06 OrthoFinder
XM_002507025.1 MICPUN_113427, 113427 Minichromosome maintenance Mcm7 (PRL) 0.02 OrthoFinder
lcl|BLLF01001170.1_cds_GFH17581.1_12058 HaLaN_14243, GFH17581 DNA replication licensing factor MCM7 0.04 OrthoFinder
lcl|BLLF01001600.1_cds_GFH20235.1_14712 HaLaN_17325, GFH20235 DNA helicase 0.02 OrthoFinder
lcl|BLLF01002739.1_cds_GFH25166.1_19643 HaLaN_23090, GFH25166 DNA helicase 0.04 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57124.1_9129 PRW57124 DNA replication licensing factor MCM7 0.06 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33036.1_3726 PRW33036 DNA replication licensing factor Mcm6 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499259.1_8212 KAA8499259 DNA replication licensing factor mcm6 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006270 DNA replication initiation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004470 malic enzyme activity IEP Enrichment
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004531 deoxyribonuclease II activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016889 endodeoxyribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR033762 MCM_OB 172 300
IPR041562 MCM_lid 590 674
IPR001208 MCM_dom 343 565
IPR027925 MCM_N 14 161
No external refs found!