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  5. Vocar.0028s0031.1

Vocar.0028s0031.1 (32895618)


Aliases : 32895618

Description : WD40 repeat; Coatomer, alpha subunit, C-terminal; Coatomer, WD associated region [Interproscan].


Gene families : OG_01_0001822 (OrthoFinder) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0028s0031.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.152 tig00000144_g9146.t1 Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder
Cre13.g565850 30784724, COPA1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.06 OrthoFinder
Cz02g40250.t1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.04 OrthoFinder
Dusal.1106s00001.1 33203686 Coatomer, alpha subunit, C-terminal [Interproscan]. 0.02 OrthoFinder
EOD07013 No alias COPA1, alpha subunit of the coatomer [Ensembl]. 0.05 OrthoFinder
EOD15797 No alias COPA1, alpha subunit of the coatomer [Ensembl]. 0.02 OrthoFinder
OT_04G01560.1 No alias Coatomer, WD associated region; Coatomer, alpha subunit,... 0.04 OrthoFinder
Sro669_g184560.1 Contig2091.g17828 Coatomer subunit alpha 0.09 OrthoFinder
TP06G03960.1 No alias Coatomer, alpha subunit, C-terminal; Coatomer, WD... 0.04 OrthoFinder
Transcript_contig_78115 78115 Coatomer, alpha subunit, C-terminal [Interproscan]. 0.02 OrthoFinder
XM_003057597.1 MicpuC2_45432, 45432 Coatomer, WD associated region; Coatomer, alpha subunit,... 0.03 OrthoFinder
lcl|BLLF01001969.1_cds_GFH22100.1_16577 HaLaN_19511, GFH22100 Coatomer subunit alpha 0.04 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58160.1_7595 PRW58160 Coatomer subunit alpha-1 0.04 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491996.1_5004 KAA8491996 Coatomer subunit alpha 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
MF GO:0005096 GTPase activator activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
MF GO:0008146 sulfotransferase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
MF GO:0035251 UDP-glucosyltransferase activity IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
MF GO:0046527 glucosyltransferase activity IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
InterPro domains Description Start Stop
IPR010714 Coatomer_asu_C 839 1243
IPR006692 Coatomer_WD-assoc_reg 343 771
IPR001680 WD40_repeat 242 279
IPR001680 WD40_repeat 45 79
IPR001680 WD40_repeat 126 163
IPR001680 WD40_repeat 84 121
IPR001680 WD40_repeat 199 232
No external refs found!