1. Home
  2. Species
  3. Volvox carteri
  4. Sequence
  5. Vocar.0024s0205.1

Vocar.0024s0205.1 (32890299)


Aliases : 32890299

Description : Pseudouridine synthase, TruD [Interproscan].


Gene families : OG_01_0001257 (OrthoFinder) Phylogenetic Tree(s): OG0001257_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0024s0205.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020943.44 tig00020943_g16287.t1 RNA processing.RNA... 0.02 OrthoFinder
EOD17688 No alias Pseudouridine synthase, TruD [Interproscan]. 0.04 OrthoFinder
OT_09G01180.1 No alias Pseudouridine synthase, TruD [Interproscan]. 0.04 OrthoFinder
Sro600_g173370.1 Contig1881.g16396 Multisubstrate pseudouridine synthase 7 0.02 OrthoFinder
lcl|BLLF01000966.1_cds_GFH16238.1_10715 HaLaN_12620, GFH16238 TRUD domain-containing protein 0.02 OrthoFinder
lcl|BLLF01000966.1_cds_GFH16239.1_10716 HaLaN_12621, GFH16239 Hypothetical protein 0.02 OrthoFinder
lcl|LHPG02000012.1_cds_PRW45063.1_1659 PRW45063 Multisubstrate pseudouridine synthase 7-like 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005337 nucleoside transmembrane transporter activity IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
BP GO:0015858 nucleoside transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
BP GO:1901642 nucleoside transmembrane transport IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001656 PsdUridine_synth_TruD 488 784
No external refs found!