Vocar.0024s0199.1 (32890400)

Aliases : 32890400

Description : Histidine kinase/HSP90-like ATPase; TOPRIM domain; DNA topoisomerase, type IIA, subunit A/C-terminal; C-terminal associated domain of TOPRIM; DNA topoisomerase, type IIA, subunit B, domain 2 [Interproscan].

Gene families : OG_01_0001339 (OrthoFinder) Phylogenetic Tree(s): OG0001339_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0024s0199.1
Cluster	HCCA: Cluster_3

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00021432.55	tig00021432_g21247.t1	DNA topoisomerase 2 OS=Pisum sativum	0.04	OrthoFinder
Cpa\|evm.model.tig00021433.2	tig00021433_g21256.t1	DNA topoisomerase 2 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cre01.g009250	30789357, TOP2	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.1	OrthoFinder
Cz11g19140.t1	No alias	DNA topoisomerase, type IIA, subunit B, domain 2; TOPRIM...	0.07	OrthoFinder
Dusal.0487s00005.1	33203263	Histidine kinase/HSP90-like ATPase; C-terminal...	0.05	OrthoFinder
EOD17812	No alias	Putative DNA topoisomerase II [Ensembl].	0.01	OrthoFinder
EOD22469	No alias	DNA topoisomerase, type IIA, subunit A/C-terminal; DNA...	0.07	OrthoFinder
OT_13G00120.1	No alias	TOPRIM domain; DNA topoisomerase, type IIA, subunit B,...	0.05	OrthoFinder
PTI_12G02730.1	No alias	TOPRIM domain; DNA topoisomerase, type IIA, subunit...	0.02	OrthoFinder
Sro150_g068880.1	Contig1519.g13851	DNA topoisomerase 2 top-2	0.01	OrthoFinder
SymbC1.scaffold1232.13	1232.13	C-terminal associated domain of TOPRIM; DNA...	0.02	OrthoFinder
TP10G02490.1	No alias	DNA topoisomerase, type IIA, subunit A/C-terminal;...	0.04	OrthoFinder
TP10G02750.1	No alias	DNA topoisomerase, type IIA, subunit A/C-terminal;...	0.02	OrthoFinder
XM_002501981.1	MICPUN_58377, 58377	DNA topoisomerase, type IIA, subunit A/C-terminal; DNA...	0.03	OrthoFinder
XM_003057460.1	MicpuC2_46870, 46870	TOPRIM domain; DNA topoisomerase, type IIA, subunit...	0.03	OrthoFinder
lcl\|BLLF01001294.1_cds_GFH18390.1_12867	HaLaN_15188, GFH18390	DNA topoisomerase 2	0.03	OrthoFinder
lcl\|LHPG02000005.1_cds_PRW58281.1_7787	PRW58281	DNA topoisomerase 2	0.05	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8497819.1_6772	KAA8497819	DNA topoisomerase 2	0.04	OrthoFinder
lcl\|VRMN01000008.1_cds_KAA8492722.1_2458	KAA8492722	DNA topoisomerase 2	0.05	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	None	Extended
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATPase, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016887	ATPase	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000776	kinetochore	IEP	Enrichment
MF	GO:0003774	motor activity	IEP	Enrichment
MF	GO:0003777	microtubule motor activity	IEP	Enrichment
MF	GO:0003883	CTP synthase activity	IEP	Enrichment
MF	GO:0003896	DNA primase activity	IEP	Enrichment
MF	GO:0004520	endodeoxyribonuclease activity	IEP	Enrichment
MF	GO:0004531	deoxyribonuclease II activity	IEP	Enrichment
MF	GO:0004536	deoxyribonuclease activity	IEP	Enrichment
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Enrichment
MF	GO:0004797	thymidine kinase activity	IEP	Enrichment
CC	GO:0005694	chromosome	IEP	Enrichment
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Enrichment
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Enrichment
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	Enrichment
BP	GO:0006270	DNA replication initiation	IEP	Enrichment
BP	GO:0006928	movement of cell or subcellular component	IEP	Enrichment
BP	GO:0007017	microtubule-based process	IEP	Enrichment
BP	GO:0007018	microtubule-based movement	IEP	Enrichment
MF	GO:0008017	microtubule binding	IEP	Enrichment
MF	GO:0008092	cytoskeletal protein binding	IEP	Enrichment
MF	GO:0015631	tubulin binding	IEP	Enrichment
MF	GO:0016462	pyrophosphatase activity	IEP	Enrichment
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Enrichment
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	Enrichment
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Enrichment
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Enrichment
MF	GO:0016889	endodeoxyribonuclease activity, producing 3'-phosphomonoesters	IEP	Enrichment
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Enrichment
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Enrichment
MF	GO:0019136	deoxynucleoside kinase activity	IEP	Enrichment
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Enrichment
MF	GO:0019206	nucleoside kinase activity	IEP	Enrichment
CC	GO:0031262	Ndc80 complex	IEP	Enrichment
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Enrichment
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Enrichment
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Enrichment
CC	GO:0099080	supramolecular complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR013506	Topo_IIA_bsu_dom2	317	431
IPR031660	TOPRIM_C	615	741
IPR006171	TOPRIM_domain	501	599
IPR002205	Topo_IIA_A/C	744	1201
IPR003594	HATPase_C	125	272

External Links

No external refs found!

Vocar.0024s0199.1 (32890400)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation