Vocar.0024s0125.1 (32890371)


Aliases : 32890371

Description : NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; DisA/LigA, helix-hairpin-helix motif [Interproscan].


Gene families : OG_01_0002070 (OrthoFinder) Phylogenetic Tree(s): OG0002070_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0024s0125.1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Dusal.0194s00007.1 33199919 NAD-dependent DNA ligase, adenylation; NAD-dependent DNA... 0.02 OrthoFinder
SymbC1.scaffold540.2 540.2 Outer membrane lipoprotein BamD-like; Cell division... 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496128.1_2126 KAA8496128 DNA ligase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003911 DNA ligase (NAD+) activity IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
CC GO:0000813 ESCRT I complex IEP Enrichment
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0046873 metal ion transmembrane transporter activity IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
InterPro domains Description Start Stop
IPR004150 NAD_DNA_ligase_OB 607 682
IPR041663 DisA/LigA_HHH 875 938
IPR013839 DNAligase_adenylation 88 188
IPR013839 DNAligase_adenylation 520 602
IPR013839 DNAligase_adenylation 407 471
IPR013839 DNAligase_adenylation 247 305
No external refs found!