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  5. Vocar.0020s0177.1

Vocar.0020s0177.1 (32886748)


Aliases : 32886748

Description : Ribosomal protein L35A [Interproscan].


Gene families : OG_01_0003454 (OrthoFinder) Phylogenetic Tree(s): OG0003454_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0020s0177.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020723.23 tig00020723_g13442.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder
Cre10.g459250 30790514, RPL35a Protein biosynthesis.cytosolic ribosome.large subunit... 0.24 OrthoFinder
Cz08g32140.t1 No alias Ribosomal protein L35A [Interproscan]. 0.21 OrthoFinder
Dusal.0293s00005.1 33190176 Ribosomal protein L35A [Interproscan]. 0.1 OrthoFinder
EOD28237 No alias Ribosomal protein L35A [Interproscan]. 0.11 OrthoFinder
EOD40099 No alias 60S ribosomal protein L35A [Ensembl]. 0.11 OrthoFinder
OT_08G03250.1 No alias Ribosomal protein L35A [Interproscan]. 0.1 OrthoFinder
PTI_26G00860.1 No alias Ribosomal protein L35A [Interproscan]. 0.18 OrthoFinder
Sro60_g034780.1 Contig797.g8955 60S ribosomal protein L35a 0.21 OrthoFinder
SymbC1.scaffold1015.3 1015.3 Ribosomal protein L35A [Interproscan]. 0.03 OrthoFinder
TP10G03680.1 No alias Ribosomal protein L35A [Interproscan]. 0.19 OrthoFinder
XM_002508291.1 MICPUN_108826, 108826 Ribosomal protein L35A [Interproscan]. 0.17 OrthoFinder
XM_003058988.1 MicpuC2_58446, 58446 Ribosomal protein L35A [Interproscan]. 0.07 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57926.1_8416 PRW57926 60S ribosomal L35a-3 0.19 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495080.1_3610 KAA8495080 60S ribosomal protein L35a 0.2 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
CC GO:0000786 nucleosome IEP Enrichment
CC GO:0000814 ESCRT II complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030686 90S preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
InterPro domains Description Start Stop
IPR001780 Ribosomal_L35A 8 102
No external refs found!