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  5. Vocar.0019s0103.1

Vocar.0019s0103.1 (32892839)


Aliases : 32892839

Description : Hypothetical protein


Gene families : OG_01_0001270 (OrthoFinder) Phylogenetic Tree(s): OG0001270_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0019s0103.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000157.59 tig00000157_g9646.t1 Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre16.g691900 30776864 RNA processing.RNA... 0.04 OrthoFinder
Cz09g10020.t1 No alias Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.02 OrthoFinder
Cz11g12070.t1 No alias Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.03 OrthoFinder
Dusal.0448s00005.1 33185729 Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.02 OrthoFinder
OT_18G00720.1 No alias Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.02 OrthoFinder
PTI_11G00610.1 No alias Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.09 OrthoFinder
Sro83_g044530.1 Contig4450.g33427 Pseudouridine(27/28) synthase 0.01 OrthoFinder
Transcript_contig_57035 57035 Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.02 OrthoFinder
XM_002506253.1 MICPUN_104259, 104259 Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.02 OrthoFinder
XM_003063687.1 MicpuC2_3609, 3609 Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0001671 ATPase activator activity IEP Enrichment
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005534 galactose binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0070525 tRNA threonylcarbamoyladenosine metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment

No InterPro domains available for this sequence

No external refs found!