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  5. Vocar.0017s0012.1

Vocar.0017s0012.1 (32891353)


Aliases : 32891353

Description : Ribosomal protein L13 [Interproscan].


Gene families : OG_01_0003121 (OrthoFinder) Phylogenetic Tree(s): OG0003121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0017s0012.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000792.29 tig00000792_g4178.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder
Cre12.g532550 30791692, RPL13a Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder
Cz05g22130.t1 No alias Hypothetical protein 0.09 OrthoFinder
EOD25270 No alias Ribosomal protein L13 [Interproscan]. 0.04 OrthoFinder
EOD35558 No alias Ribosomal protein L13 [Interproscan]. 0.04 OrthoFinder
OT_12G02420.1 No alias Ribosomal protein L13 [Interproscan]. 0.1 OrthoFinder
PTI_02G04390.1 No alias Ribosomal protein L13 [Interproscan]. 0.17 OrthoFinder
Sro678_g186000.1 Contig2726.g21985 60S ribosomal protein L13a (Fragment) 0.24 OrthoFinder
SymbC1.scaffold1593.4 1593.4 Hypothetical protein 0.03 OrthoFinder
TP04G09050.1 No alias Hypothetical protein 0.17 OrthoFinder
XM_002507201.1 MICPUN_93104, 93104 Ribosomal protein L13 [Interproscan]. 0.2 OrthoFinder
XM_003054776.1 MicpuC2_30605, 30605 Ribosomal protein L13 [Interproscan]. 0.07 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58824.1_7345 PRW58824 60S ribosomal L13a-4 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497918.1_6871 KAA8497918 60S ribosomal protein L13a 0.18 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
CC GO:0000786 nucleosome IEP Enrichment
CC GO:0000814 ESCRT II complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030686 90S preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 6 112
No external refs found!