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  5. Vocar.0016s0281.1

Vocar.0016s0281.1 (32897879)


Aliases : 32897879

Description : Histone H2A/H2B/H3 [Interproscan].


Gene families : OG_01_0000102 (OrthoFinder) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0016s0281.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cre06.g264800 30779004 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g264900 30779615, HTB13 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g266750 30778405 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g271376 30780144 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g273850 30778673, HTB7 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g274250 30779155 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g275800 30778604 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g276550 30778890, HTB23 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g276900 30779728, HTB24 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre12.g504550 30792324 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre12.g504700 30793271 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre12.g505600 30792301, HTB17 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre12.g506200 30793175 Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder
Cre13.g570050 30784307, HTB2 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre13.g591200 30784473, HTB38 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre17.g709150 30782749 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g710450 30782433 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g711750 30781954 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g713450 30782606 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre17.g714050 30782614, HTB21 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cz02g02060.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
Cz05g04190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Cz07g08190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Cz08g27120.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Cz18g11110.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD16252 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
EOD17479 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
EOD18484 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
EOD26824 No alias Putative histone H2B [Ensembl]. 0.02 OrthoFinder
EOD34128 No alias Hypothetical protein [Ensembl]. 0.02 OrthoFinder
EOD41189 No alias Putative histone H2B [Ensembl]. 0.02 OrthoFinder
PTI_06G02120.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
PTI_06G04930.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Sro1535_g280540.1 Contig3021.g24091 Histone H2B 0.02 OrthoFinder
Sro1563_g282700.1 Contig1017.g10180 Histone H2B 0.02 OrthoFinder
Sro228_g092710.1 Contig1235.g11585 Histone H2B 0.04 OrthoFinder
Sro470_g149440.1 Contig850.g9338 Histone H2B 0.04 OrthoFinder
XM_003055466.1 MicpuC2_13212, 13212 Histone H2B 0.03 OrthoFinder
XM_003058473.1 MicpuC2_58125, 58125 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
XM_003061989.1 MicpuC2_35705, 35705 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
CC GO:0000814 ESCRT II complex IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005787 signal peptidase complex IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006465 signal peptide processing IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030686 90S preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 3 130
No external refs found!