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  5. Vocar.0015s0262.1

Vocar.0015s0262.1 (32898968)


Aliases : 32898968

Description : Helicase-associated domain; Domain of unknown function DUF1605; AAA+ ATPase domain; Helicase, C-terminal [Interproscan].


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0015s0262.1
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.25 tig00022075_g23589.t1 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder
Cre07.g329150 30774611 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 OrthoFinder
Cre07.g352251 30775310 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cz01g23210.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Dusal.0020s00025.1 33193741 Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
Dusal.0174s00024.1 33196266 Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
EOD31099 No alias Domain of unknown function DUF1605 [Interproscan]. 0.01 OrthoFinder
PTI_05G02970.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
Sro4_g003320.1 Contig3815.g29250 Splicing factor ATP-dependent RNA helicase 0.02 OrthoFinder
Sro834_g208730.1 Contig2061.g17675 Splicing factor ATP-dependent RNA helicase 0.03 OrthoFinder
XM_002502185.1 MICPUN_81845, 81845 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
XM_002508301.1 MICPUN_61000, 61000 DEAD/DEAH box helicase 0.01 OrthoFinder
XM_002508712.1 MICPUN_97967, 97967 Helicase, C-terminal; Helicase-associated domain;... 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60688.1_4603 PRW60688 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58375.1_7631 PRW58375 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.03 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32898.1_3654 PRW32898 ATP-dependent RNA helicase isoform X1 0.03 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497022.1_751 KAA8497022 ATP-dependent RNA helicase dhx8 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
MF GO:0019781 NEDD8 activating enzyme activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0045116 protein neddylation IEP Enrichment
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051253 negative regulation of RNA metabolic process IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR011709 DUF1605 602 678
IPR003593 AAA+_ATPase 68 207
IPR001650 Helicase_C 258 389
IPR007502 Helicase-assoc_dom 452 540
No external refs found!