Vocar.0011s0312.1 (32895259)

Aliases : 32895259

Description : WD40 repeat; U3 small nucleolar RNA-associated protein 15, C-terminal [Interproscan].

Gene families : OG_01_0002703 (OrthoFinder) Phylogenetic Tree(s): OG0002703_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0011s0312.1
Cluster	HCCA: Cluster_82

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020927.23	tig00020927_g15952.t1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder
Cre03.g196850	30787480	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder
EOD28493	No alias	U3 small nucleolar RNA-associated protein 15,...	0.02	OrthoFinder
EOD39299	No alias	U3 small nucleolar RNA-associated protein 15,...	0.02	OrthoFinder
OT_15G01400.1	No alias	WD40 repeat; U3 small nucleolar RNA-associated protein...	0.02	OrthoFinder
PTI_02G05950.1	No alias	U3 small nucleolar RNA-associated protein 15,...	0.02	OrthoFinder
Sro203_g085690.1	Contig1270.g11863	Associated protein 15 homolog	0.01	OrthoFinder
Transcript_contig_56682	56682	WD40 repeat; U3 small nucleolar RNA-associated protein...	0.01	OrthoFinder
XM_002502959.1	MICPUN_108508, 108508	WD40 repeat; U3 small nucleolar RNA-associated protein...	0.03	OrthoFinder
XM_003058696.1	MicpuC2_67965, 67965	U3 small nucleolar RNA-associated protein 15,...	0.03	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8497875.1_6828	KAA8497875	U3 small nucleolar RNA-associated protein 15-like	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003909	DNA ligase activity	IEP	Enrichment
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Enrichment
MF	GO:0004527	exonuclease activity	IEP	Enrichment
MF	GO:0005524	ATP binding	IEP	Enrichment
CC	GO:0005634	nucleus	IEP	Enrichment
BP	GO:0006310	DNA recombination	IEP	Enrichment
BP	GO:0006812	cation transport	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
MF	GO:0008168	methyltransferase activity	IEP	Enrichment
MF	GO:0008233	peptidase activity	IEP	Enrichment
MF	GO:0008324	cation transmembrane transporter activity	IEP	Enrichment
MF	GO:0015298	solute:cation antiporter activity	IEP	Enrichment
MF	GO:0015299	solute:proton antiporter activity	IEP	Enrichment
CC	GO:0016021	integral component of membrane	IEP	Enrichment
MF	GO:0016740	transferase activity	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Enrichment
MF	GO:0017076	purine nucleotide binding	IEP	Enrichment
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Enrichment
MF	GO:0030554	adenyl nucleotide binding	IEP	Enrichment
CC	GO:0031224	intrinsic component of membrane	IEP	Enrichment
MF	GO:0032553	ribonucleotide binding	IEP	Enrichment
MF	GO:0032555	purine ribonucleotide binding	IEP	Enrichment
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Enrichment
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Enrichment
MF	GO:0036094	small molecule binding	IEP	Enrichment
MF	GO:0043167	ion binding	IEP	Enrichment
MF	GO:0043168	anion binding	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
MF	GO:0097367	carbohydrate derivative binding	IEP	Enrichment
MF	GO:1901265	nucleoside phosphate binding	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	211	239
IPR001680	WD40_repeat	162	198
IPR018983	U3_snoRNA-assocProt_15_C	370	511

External Links

No external refs found!

Vocar.0011s0312.1 (32895259)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation