Vocar.0011s0309.1 (32895454)


Aliases : 32895454

Description : Brix domain [Interproscan].


Gene families : OG_01_0002998 (OrthoFinder) Phylogenetic Tree(s): OG0002998_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0011s0309.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001003.36 tig00001003_g6291.t1 Ribosome production factor 2 homolog OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre03.g197000 30787867 Ribosome production factor 2 homolog OS=Arabidopsis thaliana 0.06 OrthoFinder
Cz01g37260.t1 No alias Brix domain [Interproscan]. 0.05 OrthoFinder
Dusal.0095s00009.1 33190289 Brix domain [Interproscan]. 0.03 OrthoFinder
EOD30893 No alias Brix domain [Interproscan]. 0.03 OrthoFinder
OT_17G01690.1 No alias Brix domain [Interproscan]. 0.07 OrthoFinder
PTI_06G01690.1 No alias Brix domain [Interproscan]. 0.04 OrthoFinder
Sro545_g163870.1 Contig1180.g11230 Production factor 2 homolog 0.03 OrthoFinder
TP03G03260.1 No alias Brix domain [Interproscan]. 0.03 OrthoFinder
Transcript_contig_82014 82014 Brix domain [Interproscan]. 0.02 OrthoFinder
XM_002506064.1 MICPUN_70830, 70830 Brix domain [Interproscan]. 0.02 OrthoFinder
XM_003056730.1 MicpuC2_5469, 5469 Brix domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001273.1_cds_GFH18265.1_12742 HaLaN_15038, GFH18265 Brix domain-containing protein 0.05 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497175.1_904 KAA8497175 Ribosome production factor 2-like 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005337 nucleoside transmembrane transporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
BP GO:0015858 nucleoside transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
BP GO:1901642 nucleoside transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR007109 Brix 47 242
No external refs found!