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  5. Vocar.0009s0346.1

Vocar.0009s0346.1 (32893436)


Aliases : 32893436

Description : 60s Acidic ribosomal protein [Interproscan].


Gene families : OG_01_0003895 (OrthoFinder) Phylogenetic Tree(s): OG0003895_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0009s0346.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000342.4 tig00000342_g24192.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder
Cre17.g738300 30782509, RPP1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.24 OrthoFinder
Cz04g14050.t1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.17 OrthoFinder
Dusal.0143s00014.1 33194270 60s Acidic ribosomal protein [Interproscan]. 0.11 OrthoFinder
OT_16G01900.1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.05 OrthoFinder
PTI_05G03770.1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.16 OrthoFinder
Sro608_g174750.1 Contig3978.g30558 60s Acidic ribosomal protein [Interproscan]. 0.21 OrthoFinder
TP09G01390.1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495017.1_3547 KAA8495017 60S acidic ribosomal protein P1 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
CC GO:0008250 oligosaccharyltransferase complex IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030686 90S preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0034998 oligosaccharyltransferase I complex IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment

No InterPro domains available for this sequence

No external refs found!