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Aliases : 32897202
Description : Plectin/S10, N-terminal [Interproscan].
Gene families : OG_01_0003431 (OrthoFinder) Phylogenetic Tree(s): OG0003431_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Vocar.0008s0151.1 | |
| Cluster | HCCA: Cluster_26 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00001164.5 | tig00001164_g7395.t1 | 40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica | 0.15 | OrthoFinder | |
| Cre09.g411100 | 30781073, RPS10 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.09 | OrthoFinder | |
| Cz05g11070.t1 | No alias | Plectin/S10, N-terminal [Interproscan]. | 0.19 | OrthoFinder | |
| Dusal.0053s00007.1 | 33186577 | Plectin/S10, N-terminal [Interproscan]. | 0.13 | OrthoFinder | |
| EOD07351 | No alias | Plectin/S10, N-terminal [Interproscan]. | 0.06 | OrthoFinder | |
| EOD26565 | No alias | Plectin/S10, N-terminal [Interproscan]. | 0.05 | OrthoFinder | |
| EOD33155 | No alias | Plectin/S10, N-terminal [Interproscan]. | 0.03 | OrthoFinder | |
| OT_01G00990.1 | No alias | Plectin/S10, N-terminal [Interproscan]. | 0.13 | OrthoFinder | |
| PTI_09G04580.1 | No alias | Plectin/S10, N-terminal [Interproscan]. | 0.19 | OrthoFinder | |
| Sro128_g061360.1 | Contig1654.g14912 | 40S ribosomal protein S10 | 0.21 | OrthoFinder | |
| TP04G01520.1 | No alias | Plectin/S10, N-terminal [Interproscan]. | 0.23 | OrthoFinder | |
| XM_002500912.1 | MICPUN_90249, 90249 | Plectin/S10, N-terminal [Interproscan]. | 0.13 | OrthoFinder | |
| XM_003056116.1 | MicpuC2_55703, 55703 | 40S ribosomal protein S10 (RPS10) | 0.07 | OrthoFinder | |
| lcl|LHPG02000020.1_cds_PRW21048.1_4816 | PRW21048 | 40S ribosomal S10 | 0.2 | OrthoFinder | |
| lcl|VRMN01000002.1_cds_KAA8496384.1_113 | KAA8496384 | 40S ribosomal protein S10 | 0.1 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Enrichment |
| CC | GO:0000786 | nucleosome | IEP | Enrichment |
| CC | GO:0000814 | ESCRT II complex | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Enrichment |
| MF | GO:0005198 | structural molecule activity | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005730 | nucleolus | IEP | Enrichment |
| CC | GO:0005840 | ribosome | IEP | Enrichment |
| BP | GO:0006412 | translation | IEP | Enrichment |
| BP | GO:0006518 | peptide metabolic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0019538 | protein metabolic process | IEP | Enrichment |
| MF | GO:0019843 | rRNA binding | IEP | Enrichment |
| BP | GO:0030490 | maturation of SSU-rRNA | IEP | Enrichment |
| CC | GO:0030684 | preribosome | IEP | Enrichment |
| CC | GO:0030686 | 90S preribosome | IEP | Enrichment |
| CC | GO:0030688 | preribosome, small subunit precursor | IEP | Enrichment |
| CC | GO:0032991 | protein-containing complex | IEP | Enrichment |
| CC | GO:0032993 | protein-DNA complex | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| CC | GO:0036452 | ESCRT complex | IEP | Enrichment |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Enrichment |
| BP | GO:0043604 | amide biosynthetic process | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Enrichment |
| CC | GO:0044815 | DNA packaging complex | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| BP | GO:0071985 | multivesicular body sorting pathway | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005326 | S10_plectin_N | 3 | 95 |
| No external refs found! |