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  5. Vocar.0007s0207.1

Vocar.0007s0207.1 (32888237)


Aliases : 32888237

Description : U3 small nucleolar RNA-associated protein 10, N-terminal; BP28, C-terminal domain [Interproscan].


Gene families : OG_01_0001400 (OrthoFinder) Phylogenetic Tree(s): OG0001400_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0007s0207.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cre12.g548000 30793370 Uncharacterized protein At3g06530 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cz07g10090.t1 No alias U3 small nucleolar RNA-associated protein 10, N-terminal... 0.03 OrthoFinder
Cz07g10100.t1 No alias BP28, C-terminal domain [Interproscan]. 0.05 OrthoFinder
EOD15958 No alias BP28, C-terminal domain [Interproscan]. 0.04 OrthoFinder
OT_08G00810.1 No alias BP28, C-terminal domain; U3 small nucleolar... 0.02 OrthoFinder
PTI_08G04460.1 No alias BP28, C-terminal domain; U3 small nucleolar... 0.08 OrthoFinder
Sro819_g207040.1 Contig8.g90 HEAT repeat-containing protein 1 0.05 OrthoFinder
TP06G00080.1 No alias Hypothetical protein 0.02 OrthoFinder
Transcript_contig_53878 53878 BP28, C-terminal domain; U3 small nucleolar... 0.04 OrthoFinder
XM_002501766.1 MICPUN_57945, 57945 BP28, C-terminal domain; U3 small nucleolar... 0.04 OrthoFinder
XM_003058444.1 MicpuC2_68174, 68174 Hypothetical protein 0.02 OrthoFinder
XM_003058445.1 MicpuC2_58070, 58070 BP28, C-terminal domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61623.1_230 PRW61623 U3 small nucleolar RNA-associated protein 10,... 0.09 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491185.1_5813 KAA8491185 HEAT repeat-containing protein 1 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005337 nucleoside transmembrane transporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0015858 nucleoside transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
BP GO:1901642 nucleoside transmembrane transport IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR012954 BP28_C_dom 2081 2262
IPR022125 U3snoRNP10_N 264 383
No external refs found!