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  5. Vocar.0006s0441.1

Vocar.0006s0441.1 (32894082)


Aliases : 32894082

Description : Myb-like DNA-binding domain [Interproscan].


Gene families : OG_01_0000018 (OrthoFinder) Phylogenetic Tree(s): OG0000018_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0006s0441.1
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
Cre03.g144747 30787894 RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder
Cre03.g197100 30787755 RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder
Cz02g00230.t1 No alias SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
Cz06g08120.t1 No alias SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
Cz06g09120.t1 No alias SANT/Myb domain [Interproscan]. 0.03 OrthoFinder
EOD36531 No alias SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
EOD39718 No alias Myb-like DNA-binding domain [Interproscan]. 0.02 OrthoFinder
TP03G03200.1 No alias SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_55280 55280 SANT/Myb domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000566.1_cds_GFH13015.1_7492 HaLaN_08814, GFH13015 SANT/Myb domain [Interproscan]. 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497935.1_6888 KAA8497935 Transcription factor MYB3R-5 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009314 response to radiation IEP Enrichment
BP GO:0009411 response to UV IEP Enrichment
BP GO:0009416 response to light stimulus IEP Enrichment
BP GO:0009628 response to abiotic stimulus IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0033897 ribonuclease T2 activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment

No InterPro domains available for this sequence

No external refs found!