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  5. Vocar.0006s0289.1

Vocar.0006s0289.1 (32893941)


Aliases : 32893941

Description : Zinc finger, PHD-finger; Zinc finger, C5HC2-type; Lysine-specific demethylase-like domain; JmjN domain; ARID DNA-binding domain; JmjC domain [Interproscan].


Gene families : OG_01_0000339 (OrthoFinder) Phylogenetic Tree(s): OG0000339_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0006s0289.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_54742 54742 JmjN domain; JmjC domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_67482 67482 Zinc finger, C5HC2-type; JmjN domain; JmjC domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58727.1_7237 PRW58727 Lysine-specific demethylase 4A-like isoform X1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006606 protein import into nucleus IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034504 protein localization to nucleus IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051170 import into nucleus IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
InterPro domains Description Start Stop
IPR013637 Lys_sp_deMease-like_dom 1692 1842
IPR013637 Lys_sp_deMease-like_dom 1962 2331
IPR019787 Znf_PHD-finger 694 741
IPR003347 JmjC_dom 870 1004
IPR004198 Znf_C5HC2 1190 1243
IPR003349 JmjN 20 53
IPR001606 ARID_dom 90 177
No external refs found!