Vocar.0006s0269.1 (32893895)


Aliases : 32893895

Description : Regulator of chromosome condensation, RCC1 [Interproscan].


Gene families : OG_01_0000020 (OrthoFinder) Phylogenetic Tree(s): OG0000020_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0006s0269.1
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021178.12 tig00021178_g19202.t2 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00021352.24 tig00021352_g20694.t1 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre01.g025900 30789384 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre12.g528350 30791846 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.04 OrthoFinder
EOD12125 No alias Regulator of chromosome condensation (RCC1) repeat;... 0.03 OrthoFinder
OT_01G06410.1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.04 OrthoFinder
OT_08G02470.1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
Sro289_g109030.1 Contig4471.g33587 RCC1 and BTB domain-containing protein 2 0.02 OrthoFinder
Transcript_contig_2579 2579 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
XM_003058490.1 MicpuC2_17539, 17539 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01002473.1_cds_GFH24209.1_18686 HaLaN_21957, GFH24209 UV-resistance 8 protein 0.02 OrthoFinder
lcl|BLLF01005733.1_cds_GFH31570.1_26047 HaLaN_30640, GFH31570 ANK_REP_REGION domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44422.1_2159 PRW44422 E3 ubiquitin-ligase HERC2 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 95 147
IPR000408 Reg_chr_condens 342 392
IPR000408 Reg_chr_condens 275 338
IPR000408 Reg_chr_condens 152 213
IPR000408 Reg_chr_condens 396 449
No external refs found!