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  5. Vocar.0006s0188.1

Vocar.0006s0188.1 (32894192)


Aliases : 32894192

Description : SET domain; Rubisco LSMT, substrate-binding domain [Interproscan].


Gene families : OG_01_0000712 (OrthoFinder) Phylogenetic Tree(s): OG0000712_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0006s0188.1
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000658.25 tig00000658_g2915.t1 Ribulose-1,5 bisphosphate carboxylase/oxygenase large... 0.02 OrthoFinder
Cpa|evm.model.tig00020554.100 tig00020554_g10878.t1 Enzyme classification.EC_2 transferases.EC_2.1... 0.02 OrthoFinder
Cpa|evm.model.tig00021348.11 tig00021348_g20514.t1 No description available 0.01 OrthoFinder
Cre12.g524500 30793297, RMT2 No description available 0.03 OrthoFinder
Sro1726_g293820.1 Contig1975.g16891 Ribulose-1,5 bisphosphate carboxylase/oxygenase large... 0.02 OrthoFinder
Transcript_contig_56157 56157 Rubisco LSMT, substrate-binding domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003989 acetyl-CoA carboxylase activity IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005384 manganese ion transmembrane transporter activity IEP Enrichment
BP GO:0006099 tricarboxylic acid cycle IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006450 regulation of translational fidelity IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
BP GO:0006808 regulation of nitrogen utilization IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
BP GO:0006873 cellular ion homeostasis IEP Enrichment
BP GO:0006875 cellular metal ion homeostasis IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
CC GO:0009317 acetyl-CoA carboxylase complex IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015293 symporter activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
BP GO:0015977 carbon fixation IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016421 CoA carboxylase activity IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016790 thiolester hydrolase activity IEP Enrichment
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
BP GO:0030003 cellular cation homeostasis IEP Enrichment
BP GO:0030026 cellular manganese ion homeostasis IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0032787 monocarboxylic acid metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Enrichment
BP GO:0046916 cellular transition metal ion homeostasis IEP Enrichment
BP GO:0048878 chemical homeostasis IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
BP GO:0050801 ion homeostasis IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0055065 metal ion homeostasis IEP Enrichment
BP GO:0055071 manganese ion homeostasis IEP Enrichment
BP GO:0055076 transition metal ion homeostasis IEP Enrichment
BP GO:0055080 cation homeostasis IEP Enrichment
BP GO:0055082 cellular chemical homeostasis IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
MF GO:0070567 cytidylyltransferase activity IEP Enrichment
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Enrichment
BP GO:0098771 inorganic ion homeostasis IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR001214 SET_dom 98 369
IPR015353 Rubisco_LSMT_subst-bd 403 585
No external refs found!