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  5. Vocar.0006s0162.1

Vocar.0006s0162.1 (32894373)


Aliases : 32894373

Description : WD40 repeat; BING4, C-terminal domain [Interproscan].


Gene families : OG_01_0003472 (OrthoFinder) Phylogenetic Tree(s): OG0003472_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0006s0162.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001366.4 tig00001366_g8379.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder
Cre12.g502800 30793578 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder
Dusal.0308s00015.1 33194622 WD40 repeat; BING4, C-terminal domain [Interproscan]. 0.02 OrthoFinder
EOD27151 No alias BING4, C-terminal domain [Interproscan]. 0.01 OrthoFinder
OT_01G05520.1 No alias BING4, C-terminal domain; WD40 repeat [Interproscan]. 0.03 OrthoFinder
Sro791_g202910.1 Contig1638.g14757 U3 small nucleolar RNA-associated protein 7 0.03 OrthoFinder
TP22G01560.1 No alias WD40 repeat; BING4, C-terminal domain [Interproscan]. 0.03 OrthoFinder
XM_002508617.1 MICPUN_85803, 85803 WD40 repeat; BING4, C-terminal domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01007107.1_cds_GFH32773.1_27250 HaLaN_32050, GFH32773 WD_REPEATS_REGION domain-containing protein 0.04 OrthoFinder
lcl|LHPG02000009.1_cds_PRW55933.1_9998 PRW55933 WD40 repeat 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492845.1_2581 KAA8492845 U3 small nucleolar RNA-associated protein 7 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0031082 BLOC complex IEP Enrichment
CC GO:0031083 BLOC-1 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR012952 BING4_C_dom 359 437
IPR001680 WD40_repeat 280 310
No external refs found!