1. Home
  2. Species
  3. Volvox carteri
  4. Sequence
  5. Vocar.0006s0118.1

Vocar.0006s0118.1 (32893929)


Aliases : 32893929

Description : NVL2, nucleolin binding domain; ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain [Interproscan].


Gene families : OG_01_0000083 (OrthoFinder) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0006s0118.1
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000525.10 tig00000525_g1953.t1 Cell division control protein 48 homolog C... 0.01 OrthoFinder
Cre09.g398550 30781371 Cell division control protein 48 homolog C... 0.02 OrthoFinder
Dusal.0347s00013.1 33190077 ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
OT_17G01910.1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.02 OrthoFinder
PTI_33G00060.1 No alias ATPase, AAA-type, core [Interproscan]. 0.03 OrthoFinder
Sro387_g132160.1 Contig424.g5701 Spermatogenesis-associated protein 5-like protein 1 0.01 OrthoFinder
XM_002500797.1 MICPUN_79795, 79795 AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core... 0.05 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57417.1_8902 PRW57417 Ribosome biogenesis ATPase RIX7 0.04 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18391.1_5820 PRW18391 Cell division cycle 48-like protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004556 alpha-amylase activity IEP Enrichment
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006144 purine nucleobase metabolic process IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP Enrichment
BP GO:0009112 nucleobase metabolic process IEP Enrichment
BP GO:0009113 purine nucleobase biosynthetic process IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0016160 amylase activity IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Enrichment
MF GO:0019104 DNA N-glycosylase activity IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0046112 nucleobase biosynthetic process IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 685 719
IPR041569 AAA_lid_3 1003 1054
IPR003959 ATPase_AAA_core 850 980
IPR003959 ATPase_AAA_core 493 661
IPR031996 NVL2_nucleolin-bd 19 78
No external refs found!