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  5. Vocar.0006s0010.1

Vocar.0006s0010.1 (32894168)


Aliases : 32894168

Description : DEAD/DEAH box helicase domain; Helicase, C-terminal [Interproscan].


Gene families : OG_01_0002745 (OrthoFinder) Phylogenetic Tree(s): OG0002745_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0006s0010.1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Cre07.g334200 30774219 DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cz02g00210.t1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000130.1_cds_GFH07999.1_2476 HaLaN_02893, GFH07999 DEAD box RNA helicase CiRH43 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56144.1_9991 PRW56144 DEAD-box ATP-dependent RNA helicase 35 isoform A 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0000813 ESCRT I complex IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 253 432
IPR001650 Helicase_C 469 576
No external refs found!