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  5. Vocar.0005s0040.1

Vocar.0005s0040.1 (32884011)


Aliases : 32884011

Description : Helicase-associated domain; Domain of unknown function DUF1605; Helicase, C-terminal [Interproscan].


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0005s0040.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020531.53 tig00020531_g10059.t1 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OrthoFinder
Cpa|evm.model.tig00022075.25 tig00022075_g23589.t1 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder
Cre11.g467654 30775609 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder
Cz14g08150.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Dusal.0003s00057.1 33187539 Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
Dusal.0072s00015.1 33199066 Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
Dusal.0244s00011.1 33186504 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
OT_08G03320.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
PTI_28G00240.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
Sro1676_g290440.1 Contig3487.g27033 Splicing factor ATP-dependent RNA helicase 0.02 OrthoFinder
Transcript_contig_57953 57953 Hypothetical protein 0.01 OrthoFinder
XM_002500528.1 MICPUN_97165, 97165 Helicase, C-terminal; Helicase-associated domain; Domain... 0.03 OrthoFinder
XM_003057297.1 MicpuC2_25774, 25774 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
lcl|BLLF01001160.1_cds_GFH17514.1_11991 HaLaN_14169, GFH17514 Helicase-associated domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58375.1_7631 PRW58375 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0004143 diacylglycerol kinase activity IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0004602 glutathione peroxidase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0006906 vesicle fusion IEP Enrichment
BP GO:0006914 autophagy IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
BP GO:0007030 Golgi organization IEP Enrichment
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Enrichment
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016050 vesicle organization IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Enrichment
BP GO:0048284 organelle fusion IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0061025 membrane fusion IEP Enrichment
BP GO:0061919 process utilizing autophagic mechanism IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0090174 organelle membrane fusion IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 714 838
IPR011709 DUF1605 1049 1136
IPR007502 Helicase-assoc_dom 901 989
No external refs found!