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  5. Vocar.0004s0072.1

Vocar.0004s0072.1 (32889789)


Aliases : 32889789

Description : Carotenoid oxygenase [Interproscan].


Gene families : OG_01_0000773 (OrthoFinder) Phylogenetic Tree(s): OG0000773_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0004s0072.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Cre16.g657800 30777499, CCD3 Carotenoid 9,10(9,10)-cleavage dioxygenase 1 OS=Pisum sativum 0.1 OrthoFinder
Cz01g15060.t1 No alias Carotenoid oxygenase [Interproscan]. 0.06 OrthoFinder
Cz09g31270.t1 No alias Carotenoid oxygenase [Interproscan]. 0.06 OrthoFinder
EOD18175 No alias Carotenoid oxygenase [Interproscan]. 0.03 OrthoFinder
PTI_02G02900.1 No alias Carotenoid oxygenase [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54945 54945 Carotenoid oxygenase [Interproscan]. 0.02 OrthoFinder
XM_002499814.1 MICPUN_56538, 56538 Carotenoid oxygenase [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01001104.1_cds_GFH17146.1_11623 HaLaN_13711, GFH17146 Carotenoid oxygenase 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59430.1_6911 PRW59430 Apocarotenoid-15,15-oxygenase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR004294 Carotenoid_Oase 78 599
No external refs found!