1. Home
  2. Species
  3. Volvox carteri
  4. Sequence
  5. Vocar.0003s0482.1

Vocar.0003s0482.1 (32888943)


Aliases : 32888943

Description : DEAD/DEAH box helicase domain; Helicase, C-terminal [Interproscan].


Gene families : OG_01_0003345 (OrthoFinder) Phylogenetic Tree(s): OG0003345_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0003s0482.1
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001071.15 tig00001071_g6806.t1 RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase 0.02 OrthoFinder
Cre05.g238900 30783389 RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase 0.05 OrthoFinder
Dusal.0269s00014.1 33186351 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
EOD11447 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
OT_03G02370.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
PTI_02G03460.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
Sro1828_g300190.1 Contig4573.g34140 Probable ATP-dependent RNA helicase DDX52 0.05 OrthoFinder
XM_002501219.1 MICPUN_67228, 67228 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
XM_003062302.1 MicpuC2_35851, 35851 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
lcl|BLLF01001053.1_cds_GFH16801.1_11278 HaLaN_13298, GFH16801 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58819.1_7193 PRW58819 DEAD-box ATP-dependent RNA helicase 57 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004143 diacylglycerol kinase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Enrichment
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 476 583
IPR011545 DEAD/DEAH_box_helicase_dom 269 438
No external refs found!