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  5. Vocar.0002s0021.1

Vocar.0002s0021.1 (32890790)


Aliases : 32890790

Description : Ribosomal protein L25/L23; Ribosomal protein L23/L25, N-terminal [Interproscan].


Gene families : OG_01_0004081 (OrthoFinder) Phylogenetic Tree(s): OG0004081_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0002s0021.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000037.39 tig00000037_g10108.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 OrthoFinder
Cre06.g282500 30779252, RPL23a Protein biosynthesis.cytosolic ribosome.large subunit... 0.25 OrthoFinder
Cz15g20240.t1 No alias Ribosomal protein L23/L25, N-terminal; Ribosomal protein... 0.21 OrthoFinder
Dusal.0705s00006.1 33186300 Ribosomal protein L23/L25, N-terminal; Ribosomal protein... 0.13 OrthoFinder
OT_08G04160.1 No alias Ribosomal protein L25/L23; Ribosomal protein L23/L25,... 0.11 OrthoFinder
PTI_08G02770.1 No alias Ribosomal protein L25/L23; Ribosomal protein L23/L25,... 0.14 OrthoFinder
Sro521_g159410.1 Contig1979.g16931 60S ribosomal protein L23A 0.27 OrthoFinder
TP06G05220.1 No alias Ribosomal protein L23/L25, N-terminal; Ribosomal protein... 0.21 OrthoFinder
XM_002507915.1 MICPUN_91476, 91476 Ribosomal protein L23/L25, N-terminal; Ribosomal protein... 0.2 OrthoFinder
XM_003058530.1 MicpuC2_33613, 33613 Ribosomal protein L25/L23; Ribosomal protein L23/L25,... 0.1 OrthoFinder
lcl|LHPG02000015.1_cds_PRW34016.1_3146 PRW34016 60S ribosomal L23A 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496143.1_2141 KAA8496143 60S ribosomal protein L23a 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
CC GO:0000786 nucleosome IEP Enrichment
CC GO:0000814 ESCRT II complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030686 90S preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
InterPro domains Description Start Stop
IPR005633 Ribosomal_L23/L25_N 9 57
IPR013025 Ribosomal_L25/23 67 126
No external refs found!