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  5. Vocar.0001s1592.1

Vocar.0001s1592.1 (32884503)


Aliases : 32884503

Description : ABC transporter-like; ABC-2 type transporter [Interproscan].


Gene families : OG_01_0000021 (OrthoFinder) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s1592.1
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
EOD13137 No alias ABC transporter-like; ABC-2 type transporter [Interproscan]. 0.02 OrthoFinder
Sro198_g084170.1 Contig2317.g19137 Putative white-brown complex homolog protein 30 0.01 OrthoFinder
Sro2078_g313670.1 Contig3499.g27148 Putative white-brown complex homolog protein 30 0.01 OrthoFinder
Transcript_contig_56456 56456 Hypothetical protein 0.01 OrthoFinder
lcl|BLLF01003649.1_cds_GFH27857.1_22334 HaLaN_26241, GFH27857 ABC transporter domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 2099 2303
IPR003439 ABC_transporter-like_ATP-bd 549 699
No external refs found!