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  5. Vocar.0001s1546.1

Vocar.0001s1546.1 (32886164)


Aliases : 32886164

Description : RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 5; DNA-directed RNA polymerase, subunit 2, hybrid-binding domain; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 7 [Interproscan].


Gene families : OG_01_0001898 (OrthoFinder) Phylogenetic Tree(s): OG0001898_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s1546.1
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000158.16 tig00000158_g10129.t1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder
Dusal.0377s00021.1 33195250 RNA polymerase, beta subunit, protrusion; RNA polymerase... 0.03 OrthoFinder
EOD11634 No alias RNA polymerase, beta subunit, protrusion; DNA-directed... 0.02 OrthoFinder
EOD30410 No alias RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2,... 0.02 OrthoFinder
OT_01G01700.1 No alias RNA polymerase Rpb2, domain 7; DNA-directed RNA... 0.02 OrthoFinder
PTI_05G00360.1 No alias RNA polymerase Rpb2, domain 2; RNA polymerase, beta... 0.02 OrthoFinder
lcl|BLLF01000259.1_cds_GFH09745.1_4222 HaLaN_04943, GFH09745 DNA-directed RNA polymerase subunit beta 0.01 OrthoFinder
lcl|BLLF01003109.1_cds_GFH26374.1_20851 HaLaN_24515, GFH26374 DNA-directed RNA polymerase subunit beta 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61164.1_363 PRW61164 DNA-directed RNA polymerase II subunit RPB2 isoform A 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61165.1_364 PRW61165 DNA-directed RNA polymerase II subunit RPB2 isoform B 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
MF GO:0061630 ubiquitin protein ligase activity IEP Enrichment
MF GO:0061659 ubiquitin-like protein ligase activity IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR007642 RNA_pol_Rpb2_2 207 398
IPR007645 RNA_pol_Rpb2_3 471 535
IPR007646 RNA_pol_Rpb2_4 570 631
IPR007641 RNA_pol_Rpb2_7 1085 1175
IPR007647 RNA_pol_Rpb2_5 657 707
IPR007644 RNA_pol_bsu_protrusion 38 446
IPR007120 DNA-dir_RNAP_su2_dom 714 1083
No external refs found!