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  5. Vocar.0001s1320.1

Vocar.0001s1320.1 (32884378)


Aliases : 32884378

Description : WD40 repeat; Small-subunit processome, Utp12 [Interproscan].


Gene families : OG_01_0002276 (OrthoFinder) Phylogenetic Tree(s): OG0002276_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s1320.1
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Dusal.0249s00016.1 33195366 WD40 repeat; Small-subunit processome, Utp12 [Interproscan]. 0.03 OrthoFinder
Sro1810_g299130.1 Contig2202.g18320 WD repeat domain 3 0.01 OrthoFinder
XM_003059717.1 MicpuC2_18664, 18664 Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0003919 FMN adenylyltransferase activity IEP Enrichment
BP GO:0006766 vitamin metabolic process IEP Enrichment
BP GO:0006767 water-soluble vitamin metabolic process IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
BP GO:0006772 thiamine metabolic process IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
BP GO:0009228 thiamine biosynthetic process IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
BP GO:0042723 thiamine-containing compound metabolic process IEP Enrichment
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
MF GO:0052855 ADP-dependent NAD(P)H-hydrate dehydratase activity IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 246 279
IPR001680 WD40_repeat 140 178
IPR001680 WD40_repeat 781 814
IPR001680 WD40_repeat 691 720
IPR001680 WD40_repeat 285 320
IPR001680 WD40_repeat 863 898
IPR001680 WD40_repeat 820 857
IPR007148 SSU_processome_Utp12 1012 1112
No external refs found!