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  5. Vocar.0001s1202.1

Vocar.0001s1202.1 (32886168)


Aliases : 32886168

Description : ClpA/ClpB, AAA lid domain; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal [Interproscan].


Gene families : OG_01_0000068 (OrthoFinder) Phylogenetic Tree(s): OG0000068_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s1202.1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001416.8 tig00001416_g8954.t1 Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre12.g533351 30793290 Chaperone protein ClpB3, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder
Dusal.0238s00006.1 33193657 ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase,... 0.01 OrthoFinder
SymbC1.scaffold1.256 1.256 Beta propeller domain-containing family; Dockerin type I... 0.01 OrthoFinder
SymbC1.scaffold1302.4 1302.4 Clp ATPase, C-terminal; ATPase, AAA-type, core; Clp,... 0.02 OrthoFinder
SymbC1.scaffold35783.1 35783.1 ATPase, AAA-type, core; ClpA/ClpB, AAA lid domain [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold9.28 9.28 Clp ATPase, C-terminal; ATPase, AAA-type, core;... 0.01 OrthoFinder
lcl|BLLF01001856.1_cds_GFH21573.1_16050 HaLaN_18906, GFH21573 AAA domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61387.1_219 PRW61387 ATP-dependent Clp protease ATP-binding subunit-like... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005384 manganese ion transmembrane transporter activity IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
BP GO:0006808 regulation of nitrogen utilization IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
BP GO:0006873 cellular ion homeostasis IEP Enrichment
BP GO:0006875 cellular metal ion homeostasis IEP Enrichment
MF GO:0008171 O-methyltransferase activity IEP Enrichment
MF GO:0008531 riboflavin kinase activity IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015293 symporter activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
MF GO:0016790 thiolester hydrolase activity IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
BP GO:0030003 cellular cation homeostasis IEP Enrichment
BP GO:0030026 cellular manganese ion homeostasis IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
BP GO:0043647 inositol phosphate metabolic process IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Enrichment
BP GO:0046855 inositol phosphate dephosphorylation IEP Enrichment
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Enrichment
BP GO:0046916 cellular transition metal ion homeostasis IEP Enrichment
BP GO:0048878 chemical homeostasis IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0050801 ion homeostasis IEP Enrichment
BP GO:0051259 protein complex oligomerization IEP Enrichment
BP GO:0051260 protein homooligomerization IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0055065 metal ion homeostasis IEP Enrichment
BP GO:0055071 manganese ion homeostasis IEP Enrichment
BP GO:0055076 transition metal ion homeostasis IEP Enrichment
BP GO:0055080 cation homeostasis IEP Enrichment
BP GO:0055082 cellular chemical homeostasis IEP Enrichment
BP GO:0071545 inositol phosphate catabolic process IEP Enrichment
BP GO:0098771 inorganic ion homeostasis IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 704 873
IPR019489 Clp_ATPase_C 880 960
IPR004176 Clp_R_dom 112 163
IPR004176 Clp_R_dom 188 239
IPR003959 ATPase_AAA_core 297 428
IPR041546 ClpA/ClpB_AAA_lid 437 530
No external refs found!