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  5. Vocar.0001s0791.1

Vocar.0001s0791.1 (32884296)


Aliases : 32884296

Description : DEAD/DEAH box helicase domain; Helicase, C-terminal; Sec63 domain [Interproscan].


Gene families : OG_01_0000386 (OrthoFinder) Phylogenetic Tree(s): OG0000386_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s0791.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000865.28 tig00000865_g5079.t1 DExH-box ATP-dependent RNA helicase DExH12... 0.04 OrthoFinder
Cre17.g744147 30781910 RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder
Cz03g23200.t1 No alias Brr2, N-terminal helicase PWI domain; Sec63 domain;... 0.02 OrthoFinder
EOD12464 No alias Sec63 domain; Helicase, C-terminal; Brr2, N-terminal... 0.03 OrthoFinder
EOD17849 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.03 OrthoFinder
OT_08G02040.1 No alias Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.02 OrthoFinder
Sro155_g070300.1 Contig395.g5337 DExH-box ATP-dependent RNA helicase DExH17 0.03 OrthoFinder
XM_002509189.1 MICPUN_98172, 98172 Helicase, C-terminal; Brr2, N-terminal helicase PWI... 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56130.1_10381 PRW56130 U5 small nuclear ribonucleo 200 kDa helicase-like 0.04 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32955.1_3892 PRW32955 Activating signal cointegrator 1 complex subunit 3 isoform A 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0052646 alditol phosphate metabolic process IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 606 727
IPR004179 Sec63-dom 1085 1127
IPR004179 Sec63-dom 997 1084
IPR001650 Helicase_C 769 873
IPR001650 Helicase_C 1499 1581
IPR011545 DEAD/DEAH_box_helicase_dom 1176 1282
IPR004179 Sec63-dom 1714 1798
No external refs found!